Publication

Other publications

2017

1. Atkinson A, Hill S, Pakhomov E,  Siegel V, Anadon R,  Chiba S, Daly K, Downie R, Fielding S, Fretwell P, Gerrish L, Hosie G, Jessopp M, Kawaguchi S, Krafft B, Loeb V, Nishikawa J, Peat H,  Reiss C, Ross R, Quetin L, Schmidt K, Steinberg D, Subramaniam R, Tarling G, Ward P. 2017.
   KRILLBASE: a circumpolar database of Antarctic krill and salp numerical densities, 1926–2016
   Earth System Science Data 193-210. 10.5194/essd-9-193-2017
   

2. Barrios-O’Neill D, Bertolini C and Collins PC. 2017.
   Trophic cascades and the transient keystone concept
   Biological Conservation 212:191–195. 10.1016/j.biocon.2017.06.011
   

3. Bentley JW, Serpetti N, Heymans JJ. 2017.
   Investigating the potential impacts of ocean warming on the Norwegian and Barents Seas ecosystem using a time-dynamic food-web model
   Ecological Modelling 360: 94-107. 10.1016/j.ecolmodel.2017.07.002
   

4. Blanchard J, Heneghan R, Everett J, Trebilco R, Richardson A. 2017.
   From Bacteria to Whales: Using Functional Size Spectra to Model Marine Ecosystems
   Trends in Ecology & Evolution 174-186. 10.1016/j.tree.2016.12.003
   

5. Blanchard J, Watson R, Fulton E, Cottrell R, Nash K, Brndum-Bucholz A, Büchner M, Carozza D, Cheung W, Elliott J, Davidson L, Dulvy N, Dunne J, Eddy T, Galbraith E, Lotze H, Maury O, Müller C, Tittensor D, Jennings S. 2017.
   Linked sustainability challenges and trade-offs among fisheries, aquaculture and agriculture
   Nature Ecology & Evolution 1240-1249. 10.1038/s41559-017-0258-8
   

6. Broszeit S, Beaumont NJ, Uyarra MC, Heiskanen A-S-, Frost M, Somerfield P, Rossberg A, Teixeira H, Austen M. 2017.
   What can indicators of good environmental status tell us about ecosystem services?: Reducing efforts and increasing cost-effectiveness by reapplying biodiversity indicator data
   Ecological Indicators 409–442. 10.1016/j.ecolind.2017.05.057
   

7. Ellis RP, Davison W, Queirós AM, Kroeker KJ, Calosi P, Dupont S, Spicer JI, Wilson RW, Widdicombe S and Urbina MA. 2017.
   Does sex really matter? Explaining intraspecies variation in ocean acidification responses.
   Biol Lett. 10.1098/rsbl.2016.0761
   

8. Fanjul A, Villate F, Uriarte I, Iriarte A, Atkinson A, Cook K. 2017.
   Zooplankton variability at four monitoring sites of the Northeast Atlantic Shelves differing in latitude and trophic status
   Journal of Plankton Research 891-909. 10.1093/plankt/fbx054
   

9. Hooper T, Beaumont N, Griffiths C, Langmead O, Somerfield, P. 2017.
   Assessing the sensitivity of ecosystem services to changing pressures
   Ecosystem Services Volume 24, 160-169. 10.1016/j.ecoser.2017.02.016
   

10. Horne CR, Hirst AG, Atkinson D. 2017.
    Seasonal body size reductions with warming co-vary with major body size gradients in arthropod species
    Proceedings of the Royal Society B 10.1098/rspb.2017.0238
    

11. Howells RJ, Burthe SJ, Green JA, Harris MP, Newell MA, Butler A, Johns DG, Carnell EJ, Wanless S, Daunt F. 2017.
    From days to decades: short- and long-term variation in environmental conditions affect offspring diet composition of a marine top predator
    Marine Ecology Progress Series 227 - 242. 10.3354/meps12343
    

12. Lambert G, Murray LG, Hiddink JG, Hinz H, Lincoln H, Cambiè G, Hold N, Kaiser M. 2017.
    Defining thresholds of sustainable impact on benthic communities in relation to fishing disturbance.
    Scientific Reports 7, 5440.. 10.1038/s41598-017-04715-4
    

13. McConville K, Atkinson A, Fileman E, Spicer JI, Hirst AG. 2017.
    Disentangling the counteracting effects of water content and carbon mass on zooplankton growth
    Journal of Plankton Research 10.1093/plankt/fbw094
    

14. Pinnegar JK, Garrett A, Simpson SD, Engelhard GH, van der Kooij J. 2017.
    Fisheries
    MCCIP Science Review 73-99. 10.14465/2017.arc10.007-fis
    

15. Polimene L, Sailley S, Clark D, Mitra A, Allen JI. 2017.
    Biological or microbial carbon pump? The role of phytoplankton stoichiometry in ocean carbon sequestration
    Journal of Plankton Researc 39 (2): 180-186. 10.1093/plankt/fbw091
    

16. Pritchard DW, Patterson RA, Bovy HC and Barrios-O’Neill D. 2017.
    frair: An R package for fitting and comparing consumer functional responses.
    Methods in Ecology and Evolution 10.1111/2041-210X.12784
    

17. Rossberg A, Uusitalo L, Berg T, Zaiko A, Chenuil A, Uyarra MC, Borja A and Lynam CP. 2017.
    Quantitative criteria for choosing targets and indicators for sustainable use of ecosystems.
    Ecol. Ind., 72, 215-224. 10.1016/j.ecolind.2016.08.005
    

18. Spence MA, Turtle AJ. 2017.
    Making the most of survey data: Incorporating age uncertainty when fitting growth parameters
    Ecol Evol 7:7058–7068. 10.1002/ece3.3280
    

19. Waggitt JJ, Dunn H, Evans PGH, Hiddink JG, Holmes L, Keen E, Murcott B, Piano M, Robins P, Scott BE, Whitmore J & Veneruso G.. 2017.
    Regional-scale patterns in harbour porpoise occupancy of tidal stream environments.
    ICES J. Mar. Sci 10.1093/icesjms/fsx164
    

20. Wilson RJ, Speirs DC, Sabatino  A and Heath MR. 2017.
    A synthetic map of the northwest European Shelf sedimentary environment for applications in marine science
    Earth System Science Data 10.5194/essd-2017-88
    

2016

1. Alexander KA, Meyjes SA, Heymans JJ. 2016.
   Spatial ecosystem modelling of marine renewable energy installations: Gauging the utility of Ecospace
   Ecological Modelling Volume 331, 115-128. 10.1016/j.ecolmodel.2016.01.016
   

2. Barrios-O’Neill D, Ruth K, Dick J, Ricciardi A, MacIsaac H, Emmerson M. 2016.
   On the context-dependent scaling of consumer feeding rates.
   Ecology Letters 19 (6) 668-678. 10.1111/ele.12605
   

3. Börger T, Broszeit S, Ahtiainen H, Atkins JP, Burdon D, Luisetti T, Murillas A, Oinonen S, Paltriguera L, Roberts L, Uyarra M and Austen MC. 2016.
   Assessing Costs and Benefits of Measures to Achieve Good Environmental Status in European Regional Seas: Challenges, Opportunities, and Lessons Learnt
   Front. Mar. Sci. 10.3389/fmars.2016.00192
   

4. Bucklin A, Lindeque P, Rodriguez-Ezpeleta N, Lehtiniemi M. 2016.
   Metabarcoding of marine zooplankton: prospects, progress and pitfalls
   Journal of Plankton Research 393-400. 10.1093/plankt/fbw023
   

5. Cavanagh RD, Broszeit S, Pilling G, Grant SM, Murphy EJ. and Austen MC. 2016.
   Valuing biodiversity and ecosystem services – A useful way to manage and conserve marine resources? 
   Proceedings of the Royal Society of London B Biological Sciences Special Feature: The value of biodiversity in the Anthropocene. 10.1098/rspb.2016.1635
   

6. Clarke KR, Somerfield PJ, Gorley RN. 2016.
   Clustering in non-parametric multivariate analyses.
   J. Exp. Mar. Biol. Ecol. 147-155. 10.1016/j.jembe.2016.07.010
   

7. Coll M, Shannon L J, Kleisner KM, Juan-Jordá MJ, Bundy A, Akoglu AG, Banaru D, Boldt JL, Borges MF, Cook A, Diallo I, Fu C, Fox C, Gascuel D, Gurney L J, Hattab T, Heymans JJ, Jouffre D, Knight BR, Kucukavsar S, Large SI, Lynam C, Machias A, Marshall KN, Masski H, Ojaveer H, Piroddi C, Tam J, Thiao D, Thiaw M, Torres MA, Travers-Trolet M, Tsagarakis K, Tuck I, van der Meeren GI, Yemane D, Zador SG & Shin YJ. 2016.
   Ecological indicators to capture the effects of fishing on biodiversity and conservation status of marine ecosystems
   Ecological Indicators 60, 947-962. 10.1016/j.ecolind.2015.08.048
   

8. Datta S, Blanchard J. 2016.
   The effects of seasonal processes on size spectrum dynamics
   Canadian Journal of Fisheries and Aquatic Sciences 73(4): 598-610. 10.1139/cjfas-2015-0468
   

9. Edwards A, Robinson J, Plank M, Baum J and Blanchard J. 2016.
   Testing and recommending methods for fitting size spectra to data
   Methods in Ecology and Evolution 10.1111/2041-210X.12641
   

10. Farcas A, Rossberg A. 2016.
    Maximum sustainable yield from interacting fish stocks in an uncertain world: two policy choices and underlying trade-offs.
    ICES Journal of Marine Science 10.1093/icesjms/fsw113
    

11. Heymans JJ, Coll M, Link JS, Mackinson S, Steenbeek J, Walters C, Christensen V. 2016.
    Best practice in Ecopath with Ecosim food-web models for ecosystem-based management
    Ecological Modelling Volume 331, 173-184. 10.1016/j.ecolmodel.2015.12.007
    

12. Hirst AG, Lilley MKS, Glazier DS, Atkinson D. 2016.
    Ontogenetic body-mass scaling of nitrogen excretion relates to body surface area in diverse pelagic invertebrates
    Limnology and Oceanography Volume 62, Issue 1, Pages 311–319. 10.1002/lno.10396
    

13. Horne CR, Hirst AG, Atkinson D, Neves A, Kiørboe T. 2016.
    A global synthesis of seasonal temperature-size responses in copepods
    Global Ecology and Biogeography 25: 988-999. . 10.1111/geb.12460
    

14. Lessin G, Artioli Y, Queirós AM, Widdicombe S, Blackford JC. 2016.
    Modelling impacts and recovery in benthic communities exposed to localised high CO₂
    Marine Pollution Bulletin 267-280. 10.1016/j.marpolbul.2016.05.071
    

15. Lyons D, Arvanitidis C, Blight A, Chatzinikolaou E, Guy-Haim T, Kotta J, Orav-Kotta H, Queirós AM, Rilov G, Somerfield PJ, Crowe TP . 2016.
    There are no whole truths in meta-analyses: all their truths are half-truths.
    Global Change Biology 22: 968-971. 10.1111/gcb.12989
    

16. Murphy E, Cavanagh RD, Drinkwater FK, Grant SM, Heymans JJ, Hofmann EE, Hunt Jr GL, Johnston NM. 2016.
    Understanding the structure and functioning of polar pelagic ecosystems to predict the impacts of change
    Proceedings of the Royal Society B: Biological Sciences 283. 10.1098/rspb.2016.1646
    

17. Papathanasopoulou E, Queirós AM, Beaumont N, Hooper T, & Nunes J. 2016.
    What evidence exists on the local impacts of energy systems on marine ecosystem services: a systematic map.
    Environmental Evidence 5(1), 25.. 10.1186/s13750-016-0075-6
    

18. Queiros AM, Strong JA, Mazik K, Carstensen J, Bruun J, Somerfield PJ, Bruhn A, Ciavatta S, Chuševė R, Nygård H, Papadopoulou N, Pantazi M, Krause-Jensen D. 2016.
    An objective framework to test the quality of candidate indicators of good environmental status
    Frontiers in Marine Science 3:72. 10.3389/fmars.2016.00073
    

19. Queiros AM, Huebert K, Keyl F, Fernandes JA, Stolte W, Maar M, Kay S, Jones M, Hamon K, Hendriksen G, Vermard Y, Marchal P, Teal L, Somerfield PJ, Austen M, Barange M, Sell AF, Allen JI, Peck M. 2016.
    Solutions for ecosystem-level protection of ocean systems under climate change
    Global Change Biology 10.1111/gcb.13423
    

20. Reed J, L. Shannon L, Velez L, Akoglu E, Bundy A, Coll M, Fu C, Fulton B, Grüss A, Halouani G, Heymans JJ, Houle J,  John E,  Lasram FBR, Le Loc'h F, Salihoglu B, Verley P, Shin YJ. 2016.
    Ecosystem indicators – accounting for variability in species’ trophic levels
    ICES Journal of Marine Science 74: 158-69. 10.1093/icesjms/fsw150
    

21. Schmidt K, Schlosser C, Atkinson A, Fielding S, Venables HJ, Waluda CM, Achterberg EP. 2016.
    Zooplankton Gut Passage Mobilizes Lithogenic Iron for Ocean Productivity
    Current Biology 10.1016/j.cub.2016.07.058
    

22. Schmidt K, Atkinson A. 2016.
    Feeding and Food Processing in Antarctic Krill (Euphausia superba Dana)
    Biology and Ecology of Antarctic Krill, Part of the series Advances in Polar Ecology. Chapter 5, 175-224.
    

23. Scott E, Serpetti N, Steenbeek J, Heymans JJ. 2016.
    A stepwise fitting procedure for automated fitting of Ecopath with Ecosim models.
    SoftwareX 2016 25-30. 10.1016/j.softx.2016.02.002
    

24. Villasante S, Arreguín-Sanchez F, Heymans JJ, Libralato S, Piroddi S, Christensen V, Coll M. 2016.
    Modelling marine ecosystems using the Ecopath with Ecosim food web approach: New insights to address complex dynamics after 30 years of developments
    Ecological Modelling 311: 1-4. 10.1016/j.ecolmodel.2016.04.017
    

2015

1. Acevedo-Trejos E, Brandt G, Bruggeman J and Merico A. 2015.
   Mechanisms shaping size structure and functional diversity of phytoplankton communities in the ocean.
   Scientific Reports 10.1038/srep08918
   

2. Atkinson A, Harmer R, Widdicombe CE, McEvoy A, Smyth TJ, Cummings D, Somerfield PJ, Maud J and McConville K. 2015.
   Questioning the role of phenology shifts and trophic mismatching in a planktonic food web
   Progress in Oceanography Volume 137, Part B, 498–512. 10.1016/j.pocean.2015.04.023
   

3. Broszeit S, Hattam C, Beaumont N. 2015.
   Bioremediation of waste under ocean acidification: Reviewing the role of Mytilus edulis.
   Marine Pollution Bulletin 2016 Jan 8. 5-14. 10.1016/j.marpolbul.2015.12.040
   

4. Glazier DS, Hirst AG and Atkinson D . 2015.
   Shape shifting predicts ontogenetic changes in metabolic scaling in diverse aquatic invertebrates
   The Royal Society Proceedings B 20142302.. 10.1098/rspb.2014.2302
   

5. Hirst A, Horne C, Atkinson D. 2015.
   Equal temperature–size responses of the sexes are widespread within arthropod species
   Proceedings of the Royal Society B 282: 20152475. 10.1098/rspb.2015.2475
   

6. Horne CR, Hirst AG, and Atkinson D . 2015.
   Temperature-size responses match latitudinal-size clines in arthropods, revealing critical differences between aquatic and terrestrial species
   Ecology Letters 18: 327-335. 10.1111/ele.12413
   

7. Hyder K, Allen JI, Austen A, Barciela RM, Blanchard  J, Burrows MT, Defriez E, Edwards K, Garcia-Carreras B, Heath M, Hembury DJ, Heymans JJ, Holt J, Houle J, Jennings S, Mackinson S, McPike R, Mee L, Mills DK, Montgomery C, Pearson D, Pinnegar JK, Popova EE, Rae L, Rogers SI, Rossberg AG, Speirs D, Spence M, Thorpe R, Turner RK, van der Molen J, Yool A & Paterson DM. 2015.
   Making modelling count - increasing the contribution of shelf-seas community and ecosystem models to policy development and management.
   Marine Policy 61 291–302. 10.1016/j.marpol.2015.07.015
   

8. Maud J, Atkinson A, Hirst AG, Lindeque PK, Widdicombe CE, Harmer RA, McEvoy AJ, Cummings DC.. 2015.
   How does Calanus helgolandicus maintain its population in a variable environment? Analysis of a 25-year time series from the English Channel.
   Progress in Oceanography 137: 513-523. 10.1016/j.pocean.2015.04.028
   

9. Payne M, Barange M, Cheung W, MacKenzie B, Batchelder H, Cormon X, Eddy T, Fernandes JA, Hollowed A, Jones MC, Link J, Neubauer P, Ortiz I, Queiros A, Paula JR. 2015.
   Uncertainties in projecting climate-change impacts in marine ecosystems
   ICES Journal of Marine Science 10.1093/icesjms/fsv231
   

10. Polimene L, Mitra A, Sailley SF, Ciavatta S, Widdicombe CE, Atkinson A, Allen JI. 2015.
    Decrease in diatom palatability contributes to bloom formation in the Western English Channel
    Progress in Oceanography 137:484-497. 10.1016/j.pocean.2015.04.026
    

11. Queirós AM, Bruggeman J, Stephens N, Artioli Y, Butenschön M, Blackford JC, Widdicombe S, Somerfield PJ and Allen JI. 2015.
    Placing biodiversity in ecosystem models without getting lost in translation
    Journal of Sea Research 83-90. 10.1016/j.seares.2014.10.004
    

12. Sailley SF, Polimene L, Mitra A, Atkinson A and Allen JI. 2015.
    Impact of zooplankton food selectivity on plankton dynamics and nutrient cycling
    Journal of Plankton Research 2015 37(3), 519-529. 10.1093/plankt/fbv020
    

13. Spence M, Blackwell P, Blanchard JL. 2015.
    Parameter uncertainty of a dynamic multi­species size spectrum model
    Canadian Journal of Fisheries and Aquatic Sciences 73(4), 589-597. 10.1139/cjfas­2015­0022
    

14. Woodworth-Jefcoats PA, Polovina JJ, Howell EA & Blanchard JL. 2015.
    Two takes on the ecosystem impacts of climate change and fishing: Comparing a size-based and a species-based ecosystem model in the central North Pacific
    Progress in Oceanography 138, Part B, 533-545. 10.1016/j.pocean.2015.04.004
    

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